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You have a choice.
Either have cron call mrtg on each of the individual .cfg files in turn, or use the Include: statement in the mrtg.cfg to link to them.
The HOWTO documentation explains this in more detail. If your files are rtr1.cfg and rtr2.cfg, then just put in mrtg.cfg:
routers.cgi*Ignore: yes
Include: rtr1.cfg
Include: rtr2.cfg
Then run MRTG on mrtg.cfg, and it will do everything (there are a few caveats to this, if you use global settings).
_________________ Steve Shipway UNIX Systems, ITSS, University of Auckland, NZ Woe unto them that rise up early in the morning... -- Isaiah 5:11
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